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SNPs (Koboldt et al. BMC Genomics 2010)

Table 2 from the paper (DOI: 10.1186/1471-2164-11-236)

Chr	SNP id	Location (cM)	Ultra_contig	RE	Expected DNA fragments in AF16 (bp)	Observed DNA fragments in AF16 (bp)	Expected DNA fragments in HK104 (bp)	Observed DNA fragments in HK104 (bp)	Validation type (* as predicted; ** different from prediction)
1	cb15251	13.45	cb25.fpc4321	DraI	747	700	332 and 415	310 and 400	*
	cb55627	21.82	cb25.fpc3441	HindIII	691	691	251 and 440	270 and 440	*
	cb55670	21.82	cb25.fpc3441	DraI	312 and 437	749	749	312 and 437	**
	cb650 (bhP27)	43.93	cb25.fpc4140	SacI	689	689	257 and 432	257 and 432	*
2	cb41028	11.88-13.1	cb25.fpc0011	DraI	332 and 419	332 and 400	751	800	*
	cb43091	21.28-26.58	cb25.fpc0058	HindIII	748	800	365 and 383	383 and 383	*
	cb64777	27.92-33.95	cb25.fpc4206	DraI	325 and 424	325 and 400	749	749	*
3	cb20723	12.46	cb25.fpc4153	DraI	20, 196, 220 and 311	230, 311 and 390	20, 196 and 531	230 and 800	**
	cb54953	21.77	cb25.fpc2976	HindIII	751	800	368 and 383	380 and 400	*
	cb40003	31.14	cb25.fpc0002	DraI	685	PCR failure	208 and 477	800
4	cb8971	7.88	cb25.fpc4250	DraI	750	PCR failure	337 and 413	350 and 413
	cb48850	20.02	cb25.fpc1570	HindIII	750	780	314 and 436	350 and 500	*
	cb56202	37.52-41.16	cb25.fpc3835	DraI	60, 190 and 489	60, 190 and 500	60 and 679	60 and 800	*
5	cb39304	20.98-22.23	cb25.fpc4126	HindIII	742	790	286 and 456	310 and 470	*
	cb39354	20.98-22.23	cb25.fpc4126	DraI	751	PCR failure	269 and 482	PCR failure
	cb62	17.07-17.74	cb25.fpc4470	DraI	54, 295 and 400	PCR failure	54 and 695	800
	bdP3	unknown	cb25.fpc0156	DraI	907	907	227 and 680	227 and 680	*
X	cb20148	9.52	cb25.fpc0045	DraI	660	PCR failure	171 and 489	PCR failure
	cb40232	20.1-20.71	cb25.fpc0003	HindIII	237 and 473	300 and 473	710	850	*
	cb6050	24.07	cb25.fpc4403	DraI	750	PCR failure	270 and 480	290 and 510

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SNPs (Koboldt et al. BMC Genomics 2010)