Chr Location (cM) indel ID ultra_contig indel_type Predicted indel_size (bp) Primer up Primer down AF16 Amplicon (bp) HK104 Amplicon (bp) Validation Status Predicted Observed Predicted Observed 1 12.6 cb-m142 cb25.fpc4321 INSERTION ? AAGGCCTTAAAAATGAAGATAAT TGAAAATTGAAAAACCTAGAAAA 665 700 ? 950 250 bp insertion * 1 13.5 cb-m2 cb25.fpc4321 DELETION 336 CGAGATTTCACCTCAATTATCT TACCACATACCCTAAAATCTAGC 1461 Failed PCR 1125 Failed PCR Failed PCR * 1 20.0 cb-m5 cb25.fpc4171 DELETION 100 GACATCTTCCGTGAATCATC GTTGTCCCGTTTAGTATTATGC 774 750 674 Failed PCR Failed PCR * 1 20.0 cb-m5 cb25.fpc4171 DELETION 100 GACATCTTCCGTGAATCATC CAGACTTAGATTAGAATCAGACGAC 461 500 361 500 no indel * 1 43.9 cb-m6 cb25.fpc4140 DELETION 145 TTAATGCTGGACCAAAAGTC CCTGCAATTTTTGTGTTTTT 930 900 785 1000 100 bp insertion * 2 24.2 cb-m21 cb25.fpc0058 DELETION 155 AACCAGTAAAAATAAGAGAAATTGA TCTGATTCTGATGTTTTCAGTTC 825 900 670 700 200 bp deletion * 2 37.4 cb-m16 cb25.fpc4071 DELETION 410 AAACTTAATTACCCGCAGTCT TAAATTTCGCATTATTTATGTCA 1097 >1500 687 >1500 unclear * 2 11.88-13.10 cb-m19 cb25.fpc0011 DELETION 536 GAGAGAGAACAGGTGGTTTG GAGTTGAACGTTTTGATTGAA 1364 1013 828 750 263 bp deletion * 2 27.92-33.95 cb-m149 cb25.fpc4206 INSERTION 110 TTCAGTTATGGTTCATATGTCAG GCCAGAACATCTCAAAGACT 470 490 603 600 110 bp insertion * 2 27.92-33.95 cb-m26 cb25.fpc4206 DELETION 290 CGTTGAACATTAATTTGAAGAGT AGACCAGAAGACTGGAATGAG 678 700 407 410 290 bp deletion * 3 6.1 cb-m46 cb25.fpc2587 DELETION 270 GAATCCATGTGATTTGAGAGAC TGGCTCAGAGTTGAGAGACT 747 1020 574 750 270 bp deletion * 3 6.1 cb-m155 cb25.fpc2587 INSERTION 160 GTTCTGGATTCAGAGACTTATCA TCCATAACCATGTTTAGTACCAG 1169 Failed PCR 1329 Failed PCR Failed PCR * 3 21.2 cb-m48 cb25.fpc2976 DELETION 519 AAAAAGGAGAAGAAGAAAGAGG TTCAACATCGTCACTTGAATC 1163 1200 644 1200 no indel * 3 25.8 cb-m205 cb25.fpc4079 INSERTION ? AAACTGCTTGGAATTAAAAGATA TCAATGATTATCAAAGGAGGTC 671 700 ? 1000 300 bp insertion * 3 31.3 bdP1 cb25.fpc0002 DELETION 200 CAGGGAGCGGACAACTTCAAAGG GGACACAGCCCAGGATTAGCGAC 1723 ~1700 ~1500 ~1500 200 bp deletion * 3 36.5 cb-m159 cb25.fpc4224 INSERTION 192 CCTCATAGCTGTCTAACACTCTT GAACAATTAATGAAATGCCTTAT 463 500 655 Failed PCR Failed PCR * 3 28.76-29.34 cb-m160 cb25.fpc2193 INSERTION 232 AAAAGAGCAATTTCGTGACA AAAATTGCGAATTTGTTCTAAA 821 1000 1053 1200 200 bp insertion * 4 18.2 cb-m172 cb25.fpc0039 INSERTION 254 ACATTCATTAACAAATGCAGACT ATCAAAAGCCCCATATAAACTT 650 700 904 950 250 bp insertion * 4 20.6 cb-m170 cb25.fpc4090 INSERTION 240 TGGAACTAACACTATTGTTTCAAAT TCAGAGTGAATACTCGGAATG 691 720 931 Failed PCR Failed PCR * 4 25.5 cb-m171 cb25.fpc4132 INSERTION 100 CAATTAACAAGGCAAATAAAAAC AAAAGTAGATGCAAGATTTTTGA 381 450 476 550 100 bp insertion * 4 25.5 cb-m70 cb25.fpc4132 DELETION 173 TCAGTTGAAGCTTTGAAATAGTC TTTGAGTCGAAATTCATCATT 594 >1600 421 1600 very large indel * 4 37.5236-41.1551 cb-m176 cb25.fpc3835 INSERTION 282 AATGTTTCAATTTCTAATGTTTTTC TTTAATTACAGGCGCTATGG 732 Failed PCR 1014 Failed PCR Failed PCR * 4 37.52-41.16 cb-m74 cb25.fpc3835 DELETION 300 GACGAAACAGTTGTAAATCGTA AATAGTCGAAATTGGCTAAAAA 677 1000 523 700 300 bp deletion * 4 42.39-42.96 cb-m76 cb25.fpc2328 DELETION 350 GCTAGATTCACGTTTGTTTCTAA TAGAGCCACCTAGACTTTAAGC 709 900 527 550 350 bp deletion * 4 9.1912-9.776 cb-m177 cb25.fpc4118 INSERTION 145 AAAACACTTTCCAAAATTTGATT GAGAATTTTAAACTTGCATAATGA 801 800 946 900 100 bp insertion * 5 19.0 cb-m103 cb25.fpc2220 DELETION 146 AGGTGAGAGTTTTTGACTTTCTT TTACATTGTTCAGTTGGAAACTT 600 700 454 500 200 bp deletion * 5 46.1 cb-m97 cb25.fpc4109 DELETION 215 AGATAATGGGCGAAACAGTAG ATCACTCAAGGTACTGTAGATTTTT 591 705 392 490 215 bp deletion * 5 37.01-37.70 cb-m105 cb25.fpc4063 DELETION 280 AGCACATTTTCAGTTCTAACATC GCATTTTATGTGTGCTGTGA 692 800 454 520 280 bp deletion * 5 37.01-37.70 cb-m104 cb25.fpc4063 DELETION 281 GTCAACTGTTGGTAATTGGAATA CGTGAATAGAGATAAAGTTGAGAA 942 Failed PCR 661 Failed PCR Failed PCR * 1_random cb-m13 cb25.fpc0078 DELETION 20 AGCTCCAGAAGAAGTGAAAAA AGGCTGTCGTAGTTGTGGTA 504 420 385 400 20 bp deletion * 1_random cb-m14 cb25.fpc4127 DELETION 290 CGACGTAGAATTTGAGAATATGA CAGAAGACTTCAAAAATCAGAAT 1000 1000 676 710 290 bp deletion * 1_random cb-m146 cb25.fpc4122 INSERTION 50 CAGGAAAATCGATAAATCAATAA GAGAGACGCAGACAGTTAGAGT 406 480 506 530 50 bp insertion * 1_random cb-m12 cb25.fpc4127 DELETION 505 GGTCGATTTTTCAGGAATTT AAAAATCGTTGTTTTCCAGAG 921 Failed PCR 416 1000 Failed PCR * 2_random cb-m38 cb25.fpc4131 DELETION 260 TTAAAGCAAAACACCATACGA TTTTTACTCGTTTTTCAGGTG 835 860 544 600 260 bp deletion * 2_random bdP4 cb25.fpc2441 DELETION 110 CAGGCGAAAAATGCCTGACAAGTG AATCCGTTCCGTTGATGGAGGC 1013 ~990 903 ~880 110 bp deletion * 4_random cb-m179 cb25.fpc4331 INSERTION 70 CACAAAACGCTTTGAATTTAC AGCAAACTATCGCAAAACTC 383 450 500 520 70 bp insertion * X 3.5 cb-m197 cb25.fpc4033 INSERTION 163 CCTCTTAGGCTACAGTAATCTTATC TGGGAAAATGTGCTACAGTAA 692 700 855 790 90 bp insertion * X 17.4 cb-m204 cb25.fpc4044 INSERTION 260 CATTCTTCTAATTATCAATAAGGTCA GCATCATTTCTTTTAATAACCAT 689 750 949 1000 250 bp insertion * X 30.1 cb-m136 cb25.fpc0829 DELETION 795 CACTCGATGGGATTATATAGTGA GACTTATGCCTGAATCGAAAT 1440 2000 645 750 1250 bp deletion * X 34.1 cb-m127 cb25.fpc2334 DELETION 195 TGTGAGTGTATTGATTTTTATTAGC GATGACAGGTGAAGTGAGAGA 486 600 349 405 195 bp deletion * X 34.1 cb-m126 cb25.fpc2334 DELETION 137 TGTGAGTGTATTGATTTTTATTAGC GTATGCGTGCTGTGTGTAAA 785 Failed PCR 648 Failed PCR Failed PCR * X 27.38-34.10 cb-m135 cb25.fpc0829 DELETION 136 GATCCTTGAAGGGAGAAATG ATAGCTTCTGAGAATGCAAAAA 720 900 584 Failed PCR Failed PCR * 1 0.7 cb-m1 cb25.fpc0006 DELETION 271 GGTTCCCAGTAAGTTAGAAAAAT TGGGACCACTTTAGTTATTAGAA 653 382 1 13.5 cb-m3 cb25.fpc4321 DELETION 55 TTTTCTTCTGTTTTTGATTTCAT CCCTATATAGTATTCCATGTGTTCT 480 425 1 13.5 cb-m144 cb25.fpc4321 INSERTION 214 GCTCCTTGACATCTGTTTTATT AAACCCATTTTCTTACCTTTTT 346 560 1 13.5 cb-m143 cb25.fpc4321 INSERTION 52 TAGCTGGTAGTAGCGATGGT ATCAAAAATACCGTAAAACCAC 398 450 1 15.9 cb-m4 cb25.fpc1417 DELETION 62 CTCCTTGTGCTCCTAATTTTT TACCAATTTCTTTTTCTTCTCCT 444 382 1 15.9 cb-m145 cb25.fpc0053 INSERTION 53 TGGAATTCAATTAAAAAGTATTTG CACAAGAGCACAGAGAGAAAA 348 401 1 cb-m8 cb25.fpc2888 DELETION 335 TGCTAAATGACAGCTGAAAAG TTTTTCTAATTGGATTTCTTGAG 1008 673 1 cb-m9 cb25.fpc2888 DELETION 194 AATTTCAATTTTCTGGACTTTG AAAGCTGGGATAAAAAGTTGA 589 395 1 cb-m11 cb25.fpc4030 DELETION 126 GGTCTCTAATTCCTGTTCTAGGT CAAAACGAGTCGGATTACTG 573 447 1 cb-m10 cb25.fpc4030 DELETION 63 TTTTTAGAGAATTTTCAGACTGG CAACTTCTGGAACTCTAAATGAC 508 445 1 cb-m7 cb25.fpc0091 DELETION 54 GGAAATTAGGTTAGGAGCTTTT ACTGTCCGAGCCAATTCTAT 598 544 2 46.7 cb-m17 cb25.fpc4055 DELETION 890 TATTGGGGGTAATTAGGGTAA TTAATAAATCTGGACCACTATATCTC 2348 1458 2 50.0 cb-m18 cb25.fpc0305 DELETION 222 TAGACCCAAAGTTTCGTGTAG TCAACCTTTACAGCAGAAGTAAT 577 355 2 50.0 cb-m147 cb25.fpc0305 INSERTION 120 GGGGGAGTTAGAGAGAGTTACTA CATTCTAATTGCTCACAAAATG 381 501 2 50.0 cb-m147 cb25.fpc0305 INSERTION 120 GGGGGAGTTAGAGAGAGTTACTA CATTCTAATTGCTCACAAAATG 381 501 2 11.88-13.10 cb-m20 cb25.fpc0011 DELETION 281 CAATAATTTTCATAGTTGCAAAAG GAAAGAGGAAGGAAGAAAAACT 925 644 2 11.88-13.10 cb-m148 cb25.fpc0011 INSERTION 188 GCCAATAATATTTCAATGATGTAG AAATTGAACTGATTACAGAAGGTT 363 551 2 21.28-26.58 cb-m23 cb25.fpc0058 DELETION 614 GGTGATTTAAAAATATGATAATAACG TGAAAACTGCAAGATAACTCTTC 964 350 2 21.28-26.58 cb-m22 cb25.fpc0058 DELETION 484 GGTCCATTCATAAGGATTTTTAG GCAGTTCTATTCATTTCAATAATTT 959 475 2 21.28-26.58 cb-m24 cb25.fpc0058 DELETION 419 CATTAGGAAACCCATCTAAATAA GCAGTTAAGTTCAGTTTTTCAAT 815 396 2 21.28-26.58 cb-m25 cb25.fpc0058 DELETION 75 AATTGGAAAATTGATGTGATTT AGAAGAGAGGGGAACAGTTG 756 681 2 27.92-33.95 cb-m29 cb25.fpc4206 DELETION 1609 GCCTTTTGTTCAAGGAGAAT CGGTCTAATTATTCAATGGTTC 2033 424 2 27.92-33.95 cb-m28 cb25.fpc4206 DELETION 776 AGTGTATGTGCCTTTAAACTACAG ACACGCAGTCAACAGTTTTT 1397 621 2 27.92-33.95 cb-m27 cb25.fpc4206 DELETION 67 TATAGCATAGCATTTGCCCTAT GAATACAAAGCTTAACAATAAAATTC 573 506 2 cb-m36 cb25.fpc2888 DELETION 1251 TTGTGACAAGGGAGCATAAG TCTACGGAGCAAGAAAAATG 1754 503 2 cb-m33 cb25.fpc0022 DELETION 854 ATAAATTTCAGATCGATTTTACG AGAAAATAGGCCAGAAAGATG 1242 388 2 cb-m34 cb25.fpc0071 DELETION 659 GAAAAATGGCTGAAAAATGA TCAGAAGCTTCCATAGTCAAA 1131 472 2 cb-m37 cb25.fpc1402 DELETION 476 ACAAAGGCACACTGGTTTAT TTTTATTACAAAGCCAATCTTTT 891 415 2 cb-m35 cb25.fpc3052 DELETION 143 GTTTCCTGATGAAGTGTTGTAA GGTCCAAAATCTGATACTTCAC 828 685 2 cb-m31 cb25.fpc0022 DELETION 135 AAACGAAGCGAAAAATAGAGTA AACTTGGATTTCAAAGATTACTG 777 642 2 cb-m30 cb25.fpc0022 DELETION 122 AAACACATTGAATGCTCTACG CAATTACCATCAAACATTTTCTC 468 346 2 cb-m32 cb25.fpc0022 DELETION 113 TAGCTGAAAAATGACACAAAAAT CTGAAAAACGAAGAAAAATTG 474 361 2 cb-m152 cb25.fpc2888 INSERTION 181 ATCTGAGGTTCAAAGGATTAAAA AAAATGAACTGATCTCGATAGAA 550 731 2 cb-m151 cb25.fpc0022 INSERTION 129 ACGATTTGATATTGGAGAGAAG GAAAATCCAGAAACCAAACA 400 529 2 cb-m150 cb25.fpc2454 INSERTION 70 GTCCTACTTTTTCGATTCTCAG AACCGGAAGAAAGACTTGAT 391 461 3 6.1 cb-m47 cb25.fpc2587 DELETION 76 GGAATCTCAATTTTCCAAATC CGATTGTGATCTGCTGTAGAC 423 347 3 6.1 cb-m154 cb25.fpc2587 INSERTION 94 CGAGATGCATTTGAACATCT AAATCAGTAAAAATGATCGAAAATA 383 477 3 14.3 cb-m156 cb25.fpc4341 INSERTION 131 GCTTAATTTTGAATTTTGACCTA AGCCGATCAGATAGTTATGGT 822 953 3 24.8 cb-m49 cb25.fpc4079 DELETION 1250 CACTATTGGAAACGATGTCTG CGACTCTAGTGAATAACAAGGTG 1602 352 3 24.8 cb-m50 cb25.fpc4079 DELETION 78 TTGATTAACCAAACAATAGAGTTC ATGTGACAATGAGAAGTGAAAAT 652 574 3 26.9 cb-m51 cb25.fpc0201 DELETION 1298 CTGTATACACGAGTCAGCAGAA TCGTTTTTATTTCGCTTATTTAT 1875 577 3 27.5 cb-m157 cb25.fpc4154 INSERTION 103 AATCTAGAAGGTTTTTGGTTTTT ACTGTCGTTCCTTGTATTTTTC 710 813 3 36.5 cb-m52 cb25.fpc4224 DELETION 578 TTTTGATTTGGAAGAACCTG CATATCTCAAAACTATTGTTTCAATC 938 360 3 36.5 cb-m158 cb25.fpc4224 INSERTION 85 AATCGTAAAATTTGACCTAGATTC GAGATTTTTAGCATAGAAAATTACAA 706 791 3 16.84-17.45 cb-m53 cb25.fpc2187 DELETION 498 ATGCAGAATCCAGAAACTTATTA AGAAAGGAAAATTGAAGAACAAT 1407 909 3 24.22-23.02 cb-m54 cb25.fpc2234 DELETION 96 CTTGGTATGCCAACATTTTTAT AAAATAGTCAGATTCTCAGTCCA 573 477 3 40.51-41.06 cb-m161 cb25.fpc4013 INSERTION 52 ATATGGCCCTAAACACATTTT CTGATCTCGTTCGAAAATACA 576 628 3 cb-m57 cb25.fpc2887 DELETION 1254 GCCAATTTTTGTTGTTTTGT CTCTCAAAAACTTGGAAACTACA 1756 502 3 cb-m55 cb25.fpc4030 DELETION 473 GAAATTGGGGTTTTCTGTATTT TAAAAGTGCACTCTGACAAAAA 1583 1110 3 cb-m58 cb25.fpc4426 DELETION 289 TTTATCTATCCCACATTTTCAAT GAAATTCCGTTCAAATATGC 678 389 3 cb-m56 cb25.fpc4069 DELETION 272 TCAGAATGTGAATGTATGAGAAA TCCTCACGTTTTAATAACTATCG 657 385 3 cb-m163 cb25.fpc4069 INSERTION 167 CCATATTTGCAACAAAAATCA AAGTGCGAGAGAGAGAGAGA 440 607 3 cb-m162 cb25.fpc4030 INSERTION 65 ACTCTAATTTCTTAGCCTTGGAC TTAGATGACCACCAGATGTTCT 375 440 4 7.9 cb-m61 cb25.fpc4250 DELETION 1251 AATTAGTGATGGGAGGTAATGAT ACATTTTGTTCCACGTTAGC 1966 715 4 7.9 cb-m59 cb25.fpc4250 DELETION 300 TGGACATTTTGAAACACATTT TAATTTTCCGCAACTTTTCA 666 366 4 7.9 cb-m60 cb25.fpc4250 DELETION 273 GTTTCAGAAAGGTGCTTCAA TGATCCTACGAAAGTAATTCAGA 708 435 4 7.9 cb-m62 cb25.fpc4250 DELETION 266 TAGGTTACAGAGCACATTTGAA ATTCAAAAGAAAGCCCTGAC 612 346 4 7.9 cb-m166 cb25.fpc4250 INSERTION 126 AAAGCACTCGTATTGATACTGTT TTCCAGATCCTAAAATCTCAAAT 408 534 4 7.9 cb-m165 cb25.fpc4250 INSERTION 90 AACCCAAGTGAGATTATTGAGA GCCGTAACGAGAAACTATGA 591 681 4 7.9 cb-m164 cb25.fpc4250 INSERTION 78 TCTCTTCCTTTACGTGTCAAAT AACTATAAATGAGCAAGTTTAGAAAA 365 443 4 17.6 cb-m63 cb25.fpc4260 DELETION 104 ATGAAAATTCCAGTTTATTCAAA CAGGTCACCCAGATACAGAT 513 409 4 17.6 cb-m167 cb25.fpc4260 INSERTION 100 GGATTAGAAGGGTAAACAACAAT ATCATTTGGAGCGTTACTGT 348 448 4 18.2 cb-m66 cb25.fpc0063 DELETION 476 GTTTATGTTGTCACTTTGACATATT AAGCTGACAGGTGTAACTCATT 829 353 4 18.2 cb-m64 cb25.fpc0143 DELETION 127 TTTGCTCTGCTGAATTTTTC CAAAACAGTTCAAGCCTACG 539 412 4 18.2 cb-m65 cb25.fpc0143 DELETION 107 CGAAATGATGGATTGAGTCT GTTGAAGGATAAATGGACCAC 502 395 4 18.2 cb-m172 cb25.fpc0039 INSERTION 254 ACGTATTCAGGAAACTCTGAAA TCGACGAATGAATCTTGTTT 371 625 4 18.2 cb-m168 cb25.fpc0143 INSERTION 116 GTAACGGCCGTATGTCTAAT ATTAGAAAAGGATTGCCTAAGAA 378 494 4 20.0 cb-m69 cb25.fpc1570 DELETION 72 CGATAAGACATAGGAAAAAGAAG TTCCCGTTTTACTGAAATTG 480 408 4 20.0 cb-m68 cb25.fpc0081 DELETION 69 CGACTGTAAAGGCTAAAACATT GGTGAGTTTGAGAAGCCTAAT 1063 994 4 20.0 cb-m67 cb25.fpc0081 DELETION 63 AAACCAAGCTTTATCTCCCTAC CTCCCGCTAAAACTAAGATTG 461 398 4 20.0 cb-m169 cb25.fpc0081 INSERTION 143 TAGTTTTGCAGAAATCCAAGTT GGTGAGTTTGAGAAGCCTAAT 507 650 4 25.5 cb-m71 cb25.fpc4132 DELETION 463 AATTTACGACTTGTGAGATTCTG GAAAAATTTCGAAAAACACATT 856 393 4 18.20-18.87 cb-m72 cb25.fpc0039 DELETION 74 ATTTTCCATTGAAAGAAACCTAT CGTAAGTACGAGTGCGTTTC 423 349 4 2.56-5.10 cb-m73 cb25.fpc3752 DELETION 192 ATTTCTATACTCCCTCCACCTC AGACATTGGCTGTACCAGAT 812 620 4 2.56-5.10 cb-m175 cb25.fpc3752 INSERTION 145 GCATTCGTTTATTGGTTGTT TCTCTCCAGTTGCTTCAGTC 813 958 4 2.56-5.10 cb-m174 cb25.fpc3752 INSERTION 112 CCAGAATCCATCTAGGATACG GAGGACGACCATATTACATTTC 393 505 4 2.56-5.10 cb-m173 cb25.fpc3752 INSERTION 56 AATTCGGTCATTTTAGATAATAGTC GAGCTTCTGATGATGACGAC 481 537 4 37.52-41.16 cb-m75 cb25.fpc3835 DELETION 1707 TCTGAAATTTGTCCCAAAATA TAAGGAAGGGATAAAGAGAGTATTA 2092 385 4 9.19-9.78 cb-m77 cb25.fpc4118 DELETION 1252 TTTGGTTAAAAACGGCTACA ACGTTTAAAATCATCACAAAACT 1999 747 4 cb-m80 cb25.fpc2374 DELETION 1266 GTGATTTACGTTAAATGTCACAA GGTGGAAGGTAAGAGGACAT 1610 344 4 cb-m81 cb25.fpc0065 DELETION 233 GAAATCCTCAAACTCAGAGAAC CAAAAATGCTTCCACATAATC 593 360 4 cb-m79 cb25.fpc3857 DELETION 115 AAAGCATGTTTATAACCAAATGA GCGTCTCTCAATTTTCTATACTCT 528 413 4 cb-m82 cb25.fpc3052 DELETION 113 GAAGGAAAGCTTGAAGGTAATA TGAGAAATAGTGTGATAACTGAAAA 491 378 4 cb-m78 cb25.fpc2501 DELETION 52 ATGCTGAATATTTGGATGTTTT TTTTCTAGTTACAGCCAACTGAC 497 445 4 cb-m178 cb25.fpc2501 INSERTION 117 CCAATCTTATCTGGAGAGTGATA CGATACCTTCAATCTTTGACTTA 398 515 5 3.2 cb-m87 cb25.fpc4202 DELETION 100 CGTGACGTGTGTACATTGAT TACCGTATCTGCTCTGAAAGA 677 577 5 3.2 cb-m182 cb25.fpc4202 INSERTION 157 CTGCTTCTCTGTCGTTCTCT GGTCAGTGTGCTTGTTTATCA 382 539 5 7.0 cb-m88 cb25.fpc2310 DELETION 1036 GGTATCTAGGATAGGATTTAAACAA AAAATGTGATCCAATCTTTTTC 1400 364 5 7.0 cb-m89 cb25.fpc2310 DELETION 775 TTATCAAAAATGCCTAAAGATTG CATTATTTGTCCTATCCTCAAAG 1158 383 5 8.3 cb-m91 cb25.fpc0023 DELETION 887 CATTTGAAGAATATGACGAGAAG TATCAAATATTTCTCGGAACTCA 1291 404 5 8.3 cb-m92 cb25.fpc0023 DELETION 176 TGTAATAACCTCTACCGGATCA CCATTTTCTTTGAGATAGTAAGC 599 423 5 8.3 cb-m90 cb25.fpc0023 DELETION 96 AGAAAATGTTCGATAAATTTGAA AGCATAATTTCAGGGTTTTG 685 589 5 8.3 cb-m93 cb25.fpc0023 DELETION 55 CAAGAAATTGCAGTGTTTCAT TACATATACACATCGTTGGAAGA 402 347 5 16.4 cb-m96 cb25.fpc2051 DELETION 1275 TTTTTATCAATTTGGTTTCTACG TATATGCGAATTCGTGTTTTT 1641 366 5 16.4 cb-m95 cb25.fpc2051 DELETION 736 ATTCAGTTTGAAACCAGAAAAA TGACAAAGAAGTTCAAAACTAGG 1175 439 5 16.4 cb-m94 cb25.fpc2051 DELETION 64 GCGACTGTTCGTAACTTCTG CGATAAGGTGGGAAATTTTAT 704 640 5 16.4 cb-m183 cb25.fpc2051 INSERTION 59 ACTCCATAGTACGACTGTCACAT CGTATGTTCGAATTCTCATTTT 361 420 5 19.0 cb-m103 cb25.fpc2220 DELETION 146 ACGATGTGAATATGGAGTACAGT ACGTTTGGTTTGTCAATGTC 514 368 5 46.1 cb-m184 cb25.fpc4109 INSERTION 58 TCTTGGATGTTCATTTTTCTG AATTGTTTTTCTCCCCAAAA 534 592 5 53.8 cb-m98 cb25.fpc0129 DELETION 83 GCCAGTATTGATGTCATACCA AAAATCCAAACGTCTTTCAA 499 416 5 53.8 cb-m186 cb25.fpc0129 INSERTION 59 TGCTATTCTTAACCCTTACATCA AATGACCCATACACCTGAAG 367 426 5 53.8 cb-m185 cb25.fpc0129 INSERTION 50 GACACTCTTGATAATGGCTTTT CTCCATGATAGAACTCTGTGAA 425 475 5 17.07-17.74 cb-m100 cb25.fpc4470 DELETION 200 GTAGTAGAGAGAGGGAGACAGACT TGTTTACATAGTCGCGGAGT 557 357 5 17.07-17.74 cb-m99 cb25.fpc4470 DELETION 102 TCATAAAGTCTGTGTGACAGGT TCCCTAGCAACAAGTAAAACAC 560 458 5 17.74-19.68 cb-m101 cb25.fpc2220 DELETION 95 ATCCACATGGAGTCTGAGTTA CATTAAAAACCTGGATTGAAAG 467 372 5 17.74-19.68 cb-m102 cb25.fpc2220 DELETION 51 TGCAGTCAATCGATGTGTAG AAACGGTTGATCGTTGTATG 465 414 5 17.74-19.68 cb-m187 cb25.fpc2220 INSERTION 192 CAAGAAGGATCTTGAAGCTAAG CTTCTTGGTCTTTTCGTCAG 607 799 5 cb-m112 cb25.fpc0090 DELETION 951 TACATGTGCTGCTTACTGTAGTT AAATGTCATTCCAATTATAAGAGTT 1446 495 5 cb-m108 cb25.fpc0090 DELETION 851 CGTTTCCGATAAAGAACAGT TCGGATTTAGTTTCATCTCATT 1206 355 5 cb-m114 cb25.fpc4382 DELETION 653 TCTTCTAGTTTCCGTTATCCTAA AAATCGTGTTCTCGAATTTTT 1196 543 5 cb-m107 cb25.fpc0090 DELETION 558 AGAGCGGTTGTAAACCTAAAT TTTTAGCTTCTTCTACGTTAGGAT 1274 716 5 cb-m109 cb25.fpc0090 DELETION 395 CATACCTCTCTTTGGAACGAT TTTATTCAAAATTTTCTGAGACC 933 538 5 cb-m110 cb25.fpc0090 DELETION 267 GGAACAATAAAACGATACAATACA GGTAAGGGGGTAGTTTGAAGT 677 410 5 cb-m106 cb25.fpc2887 DELETION 167 CGATAGAAGCTCTTTTGAACC TGACGAGGAATAGTGAGTAGAAA 809 642 5 cb-m113 cb25.fpc0090 DELETION 152 TTACTGAAGCATCAATCAGTTTC AAAATTTCTATACGGTGGAAAA 610 458 5 cb-m111 cb25.fpc0090 DELETION 100 TCTCGTTTTGTCACGTTTTT CCCAGCCTCTGAATATAAAAT 538 438 5 cb-m115 cb25.fpc4426 DELETION 91 GAACATCAACAAATTCTACAAGTC GCTATGGTGCAACTGAAATC 456 365 5 cb-m191 cb25.fpc2454 INSERTION 137 ACTGTTCAATGAGCCGTTAG TTCTTTCAGACAATGAAGTTCTC 472 609 5 cb-m190 cb25.fpc2887 INSERTION 135 GAGATCTCTCTATGGGTTGTACTC TGAAAATTCTGAAACCTCAAA 390 525 5 cb-m189 cb25.fpc2454 INSERTION 73 CAAGTCCACCTTCACCTAGTTA CTATCTACAAATCCGCTTCAAT 368 441 5 cb-m188 cb25.fpc2887 INSERTION 66 ATACTGCACCACCGACTAGA ACAATTGCGAGAAAAGATTC 367 433 1_random cb-m15 cb25.fpc1402 DELETION 639 AGACAAAAATGAGAGTTGTAGGA TGGTAAATTTGGAGAAATCTTTA 1308 669 2_random cb-m45 cb25.fpc4243 DELETION 1644 TTTTTCTCGTATTGCTTACTTG TTGAAATATCGGTCCTCGTAT 2173 529 2_random cb-m40 cb25.fpc2969 DELETION 1251 CGCACTTTTATTACATGCTTTAT TTTGGGCTACTGTAAACTGAAC 1755 504 2_random cb-m39 cb25.fpc2441 DELETION 812 GTGAGCTAAGAAAACAGGGATA ATAATGACGTTTCAAGCAAGAG 1261 449 2_random cb-m44 cb25.fpc4243 DELETION 697 TTTAATCGGGAGAAGAATAGG GATACTGTAGGCGTCCTTTTT 1496 799 2_random cb-m41 cb25.fpc2969 DELETION 128 TCATTTGGTATCATTTTGTTTTT GGAAAGGCAATTTGAAGATAA 559 431 2_random cb-m42 cb25.fpc4087 DELETION 76 TGAACAGAAACACATGTATTCAA CAAAATTTTTCTATTTCTTCAGATT 487 411 2_random cb-m43 cb25.fpc4131 DELETION 70 AAAACGTACTCCAAGATCTCCT AATGTCGGAAAGTTGAAAAA 443 373 2_random cb-m153 cb25.fpc4131 INSERTION 50 GTTTTGTCTGACGGTTGGTA AAACGAAATTTGACAAGAATAGA 393 443 5_random cb-m116 cb25.fpc0156 DELETION 516 TTCTTGCAGTTTGATTCCAC CCAAGACCCATATTTATATACCA 873 357 5_random cb-m119 cb25.fpc4077 DELETION 353 CAAAAGAATGCTTGTCTACCA AAAGGAAGTTGCATCAAAAAC 983 630 5_random cb-m118 cb25.fpc0156 DELETION 93 CAAATCACGTGAAATTGAAAG TAGTAGAGCTTGAATGGGACTG 649 556 5_random cb-m117 cb25.fpc0156 DELETION 62 ATTTATGGGGATAATGACACAT GAATAGAAGACTCACGAAGTTCC 533 471 5_random cb-m120 cb25.fpc4175 DELETION 56 TATTGCTCATTGGTTTTTATTTC AGTTTTGAGCCAAAATATGATAA 301 245 5_random cb-m192 cb25.fpc0156 INSERTION 231 GATCGTAAGATCGTTAATCATAATC AAGTATTACGAGGTTTTGAGGAG 516 747 Un cb-m84 cb25.fpc4075 DELETION 910 TACTGTCGTGTCTCATGCTCT CCATCACATGACTATTCATTATTT 1262 352 Un cb-m85 cb25.fpc4228 DELETION 308 CAGACTTATCGCTCCTGATG TGCTCGTTTTAAAGACTTCAT 875 567 Un cb-m86 cb25.fpc4308 DELETION 75 TAAAAGCGAAAATTCGAAAA CCTAGAGCAATTAGCGGATA 599 524 Un cb-m83 cb25.fpc2178 DELETION 66 TAATTTTCACGTTTTTCTGATTT TTGTAATTCTGATTGAAGACCAT 439 373 Un cb-m181 cb25.fpc4028 INSERTION 256 TTCAATTTGATTTTTGGAATG CTGTTCAAGGAGTTGTTGATG 362 618 Un cb-m180 cb25.fpc4228 INSERTION 88 TCAGCATCCTTCAGCACTAT CTATCAAGTTGGGATTTTTGAA 371 459 X 3.5 cb-m197 cb25.fpc4033 INSERTION 163 GAACAGAGTGAGGATGATATGG TATGTAGGCAAAACCTGAAAAC 390 553 X 9.5 cb-m121 cb25.fpc0045 DELETION 930 AACACGTGATGGAGTATGTTTAT CAGACACACATTACTAATCTCACA 1286 356 X 9.5 cb-m122 cb25.fpc0045 DELETION 88 TGTCTGCTCTTCCTTTGAAC CGTTTCCTATTTTTATTCTCATTT 443 355 X 9.5 cb-m193 cb25.fpc0045 INSERTION 73 GATCAAAGCTGCTGTTATGG CTTTCCTCTATTTACTGGGAATC 375 448 X 12.2 cb-m194 cb25.fpc4066 INSERTION 247 AATCTAGCCTGAAAACTGTAGG GTCGAGTGTGTGATTCCTATTA 353 600 X 14.7 cb-m124 cb25.fpc2397 DELETION 232 AAGTCGGAAAATTTGATGTG AATTACACCTAAGGAAGGTAACAA 646 414 X 14.7 cb-m123 cb25.fpc2397 DELETION 115 AGCTGATTTTGCTTCAATAAATA CTCACTTTTGGAGTGAATTTTT 525 410 X 17.4 cb-m204 cb25.fpc4044 INSERTION 260 GGGTTTCAATGTTGACTATTTTA TGATTAGTACGGGCATTTTT 377 637 X 24.1 cb-m125 cb25.fpc4403 DELETION 233 GTAAAAAGAGAAAGAATAATGAAACA CCTGTTAAACAAGTAGAGGACCTA 675 442 X 24.1 cb-m195 cb25.fpc4403 INSERTION 118 CCTATATATTTCATAACCAAGTGGA AGAAAATCTTCCTAAAGTAGAAAATC 390 508 X 30.1 cb-m136 cb25.fpc0829 DELETION 795 CACTCGATGGGATTATATAGTGA TTTCACAACATTTTCATCTTTTT 1145 350 X 0.66-5.64 cb-m130 cb25.fpc4033 DELETION 1533 GGATGAGTCAAAGGATTCATAA TTGAACTTCATATGAGAATATTACCT 2193 660 X 0.66-5.64 cb-m128 cb25.fpc4033 DELETION 1251 ACACATGTCCCTTCCTTTTT CATATAAACAAGTCCCCATTTC 1614 363 X 0.66-5.64 cb-m129 cb25.fpc4033 DELETION 57 GCCAAAATCTTCATAATACTCTCT TTTCTTAAAAGTTCAAAGCTTCA 420 363 X 0.66-5.64 cb-m196 cb25.fpc4033 INSERTION 93 TTACCTTTGAAAAGGACAATTTA TGTCAATGGAAATCGTTTTAG 365 458 X 20.10-20.71 cb-m132 cb25.fpc0003 DELETION 1627 GAATTTTTCACCTCATTCTATCA TGGAATTTGTTCTTATCAATTTT 1990 363 X 20.10-20.71 cb-m131 cb25.fpc0003 DELETION 1262 CAGTACCATAGTCTGCATCATT AACTAAAATAAGTTTTGCGTTATTG 1625 363 X 20.10-20.71 cb-m198 cb25.fpc0003 INSERTION 51 GCTCTTTATTCACTCGACCA AATTCAATGGATGTCATCGT 364 415 X 20.71-24.07 cb-m133 cb25.fpc4023 DELETION 1252 TGGTAATTCGATACTTGAGTTGT TTTTCAGTATTGACCGTTATTTT 1628 376 X 20.71-24.07 cb-m199 cb25.fpc4023 INSERTION 76 CATTGGATGAAAGTTCATATTTT CGTTTGTTTCAAATGATTTTT 453 529 X 26.73-27.38 cb-m134 cb25.fpc0106 DELETION 51 GATGTGCATCTGAATCTGTG CTGTCGGCTTACAACTTCTG 1319 1268 X 27.38-34.10 cb-m201 cb25.fpc0829 INSERTION 143 AATTCAAACATTTGGGTGAC TGACTTGCACTCGTAAGTTTT 605 748 X 27.38-34.10 cb-m200 cb25.fpc0829 INSERTION 88 CAAAAATCATTGGAAATGTAAAC GCAGACAACTAGTGGTGAATTT 376 464 X cb-m139 cb25.fpc3857 DELETION 426 CAGTACCTAACAATTTTTCTATCAAG CCACTAGGAGGTATCCAAAAA 783 357 X cb-m140 cb25.fpc4044 DELETION 110 GTTCTGTTGAATGACGTGTG GAAAAAGAAAATGAGTGGAAGTT 680 570 X cb-m141 cb25.fpc4044 DELETION 101 CGATCAGACATTCGATAACC GGTTCTTCAGTATCGCAAAAT 528 427 X cb-m137 cb25.fpc1402 DELETION 89 AGGACTCAGGGATACTGAATG TTTCAGGATTGTATAATGTCAGAT 560 471 X cb-m138 cb25.fpc4069 DELETION 53 TTGATTAACATGAAAGAAAAACA CGAAAGAAACAAATGAAGAAAT 416 363 X cb-m203 cb25.fpc3857 INSERTION 118 AAAATAATAGAAGAAACACGAAAAA GTAATCTGGAGGCATGTGTT 471 589 X cb-m202 cb25.fpc4069 INSERTION 105 ATGTCCATCTCATTCGACAG GGTACAGTGCTCAAAAGTGAAT 369 474