chrom	chr_start	chr_stop	ultra_contig	map_chrom	morgans	indel_type	indel_size	p1_sequence	p2_sequence	af16_amplicon	hk104_amplicon
chrI	2152547	2152988	cb25.fpc4321	Cb1	6.3-13.5	INSERTION	52	TAGCTGGTAGTAGCGATGGT	ATCAAAAATACCGTAAAACCAC	398	450
chrI	2411567	2412302	cb25.fpc4321	Cb1	6.3-13.5	DELETION	336	GGTTTTCTGGGGTACTGTTC	GCTGCCAGTAAACAATAAAGA	952	616
chrI	2559619	2560027	cb25.fpc4321	Cb1	6.3-13.5	INSERTION	214	GCTCCTTGACATCTGTTTTATT	AAACCCATTTTCTTACCTTTTT	346	560
chrI	5965612	6060584	cb25.fpc0053	Cb1	23.4	INSERTION	53	TGGAATTCAATTAAAAAGTATTTG	CACAAGAGCACAGAGAGAAAA	348	401
chrI	6676678	6677044	cb25.fpc1417	Cb1	23.4	DELETION	62	CTCCTTGTGCTCCTAATTTTT	TACCAATTTCTTTTTCTTCTCCT	444	382
chrI	8888504	9036759	cb25.fpc4171	Cb1	27.4	DELETION	100	GACATCTTCCGTGAATCATC	CAGACTTAGATTAGAATCAGACGAC	461	361
chrI	10976774	10922159	cb25.fpc4140	Cb1	51.3	DELETION	145	TTAATGCTGGACCAAAAGTC	CCATATCTTTCTTTTCCAATTTA	494	349
chrII	3341885	3978844	cb25.fpc0011	Cb2	11.9-13.1	INSERTION	188	GCCAATAATATTTCAATGATGTAG	AAATTGAACTGATTACAGAAGGTT	363	551
chrII	4113815	3207523	cb25.fpc0011	Cb2	11.9-13.1	DELETION	536	GAGAGAGAACAGGTGGTTTG	GAAATTGATATGATTTGGACAAC	906	370
chrII	6547648	9174160	cb25.fpc0058	Cb2	23.3-28.6	DELETION	484	GGTCCATTCATAAGGATTTTTAG	GCAGTTCTATTCATTTCAATAATTT	959	475
chrII	7772242	7949520	cb25.fpc0058	Cb2	23.3-28.6	DELETION	419	CATTAGGAAACCCATCTAAATAA	GCAGTTAAGTTCAGTTTTTCAAT	815	396
chrII	10606399	10606947	cb25.fpc4206	Cb2	30.0-34.8	DELETION	67	TATAGCATAGCATTTGCCCTAT	GAATACAAAGCTTAACAATAAAATTC	573	506
chrII	10685227	10685731	cb25.fpc4206	Cb2	30.0-34.8	INSERTION	133	TTCAGTTATGGTTCATATGTCAG	GCCAGAACATCTCAAAGACT	470	603
chrII	10750105	10751469	cb25.fpc4206	Cb2	30.0-34.8	DELETION	776	AGTGTATGTGCCTTTAAACTACAG	ACACGCAGTCAACAGTTTTT	1397	621
chrII	11147070	11147900	cb25.fpc4206	Cb2	30.0-34.8	DELETION	271	CGTTGAACATTAATTTGAAGAGT	AGACCAGAAGACTGGAATGAG	678	407
chrII	11371041	11373120	cb25.fpc4206	Cb2	30.0-34.8	DELETION	1609	GCCTTTTGTTCAAGGAGAAT	CGGTCTAATTATTCAATGGTTC	2033	424
chrII	11737133	11738137	cb25.fpc4071	Cb2	37.3	DELETION	410	AAACTTAATTACCCGCAGTCT	AATCAGTAATTTTCAGTAATTTTGAG	880	470
chrII	13457737	14485322	cb25.fpc0305	Cb2	49.9	INSERTION	120	GGGGGAGTTAGAGAGAGTTACTA	CATTCTAATTGCTCACAAAATG	381	501
chrII	13738129	14205341	cb25.fpc0305	Cb2	49.9	DELETION	222	TAGACCCAAAGTTTCGTGTAG	TCAACCTTTACAGCAGAAGTAAT	577	355
chrII	14015733	13927369	cb25.fpc0305	Cb2	49.9	INSERTION	120	GGGGGAGTTAGAGAGAGTTACTA	CATTCTAATTGCTCACAAAATG	381	501
chrIII	2153520	2154047	cb25.fpc4341	Cb3	14.3	INSERTION	131	TGAAAACTAAAAATTTCGCTCTA	AGCCGATCAGATAGTTATGGT	845	976
chrIII	3588989	3589959	cb25.fpc2976	Cb3	21.2	DELETION	519	AAAAAGGAGAAGAAGAAAGAGG	TAGTTGGCATGGATGTAGGT	887	368
chrIII	5682261	5682939	cb25.fpc2234	Cb3	22.4-23.0	DELETION	96	CTTGGTATGCCAACATTTTTAT	AAAATAGTCAGATTCTCAGTCCA	573	477
chrIII	8025094	8025617	cb25.fpc4079	Cb3	23.7	DELETION	78	TTGATTAACCAAACAATAGAGTTC	AATATGACACAAATCAAATAGAACA	677	599
chrIII	8935003	8936851	cb25.fpc0201	Cb3	25.7	DELETION	1298	CTGTATACACGAGTCAGCAGAA	TCGTTTTTATTTCGCTTATTTAT	1875	577
chrIII	10967083	11272044	cb25.fpc4224	Cb3	35.4	DELETION	578	TTTTGATTTGGAAGAACCTG	CATATCTCAAAACTATTGTTTCAATC	938	360
chrIII	11036227	11202446	cb25.fpc4224	Cb3	35.4	INSERTION	85	GATGATGGTACGAGAGAAAAAC	AAATTACAATTTTAGGCATAATTTC	717	802
chrIII	11187956	11050468	cb25.fpc4224	Cb3	35.4	INSERTION	192	CCTCATAGCTGTCTAACACTCTT	GAACAATTAATGAAATGCCTTAT	463	655
chrIII	13280738	13280979	cb25.fpc4013	Cb3	39.3-39.9	INSERTION	52	ATATGGCCCTAAACACATTTT	CTGATCTCGTTCGAAAATACA	576	628
chrIV	580730	581183	cb25.fpc3752	Cb4	1.9-5.1	INSERTION	56	AATTCGGTCATTTTAGATAATAGTC	GAGCTTCTGATGATGACGAC	481	537
chrIV	967411	967766	cb25.fpc3752	Cb4	1.9-5.1	INSERTION	145	GCATTCGTTTATTGGTTGTT	TCTCTCCAGTTGCTTCAGTC	813	958
chrIV	1767238	1767559	cb25.fpc3752	Cb4	1.9-5.1	INSERTION	112	CTACCGTATCACACCCATATC	GAGGACGACCATATTACATTTC	433	545
chrIV	1826964	1827432	cb25.fpc4250	Cb4	7.9	INSERTION	90	AACCCAAGTGAGATTATTGAGA	GCCGTAACGAGAAACTATGA	591	681
chrIV	2265627	2266124	cb25.fpc4250	Cb4	7.9	INSERTION	126	AAAGCACTCGTATTGATACTGTT	TTCCAGATCCTAAAATCTCAAAT	408	534
chrIV	2673542	2675092	cb25.fpc4118	Cb4	9.2-9.8	DELETION	1252	CAAACCTTTTATTAGGGTCTTAAA	TGTGAAACAGGAAAATTTGAA	1769	517
chrIV	4111043	4332491	cb25.fpc4260	Cb4	17.6	DELETION	104	ATGAAAATTCCAGTTTATTCAAA	CAGGTCACCCAGATACAGAT	513	409
chrIV	4572607	3870699	cb25.fpc4260	Cb4	17.6	INSERTION	100	GGATTAGAAGGGTAAACAACAAT	ATCATTTGGAGCGTTACTGT	348	448
chrIV	5051575	6347568	cb25.fpc0143	Cb4	18.2	INSERTION	116	GTAACGGCCGTATGTCTAAT	ATTAGAAAAGGATTGCCTAAGAA	378	494
chrIV	9528056	10601317	cb25.fpc0039	Cb4	18.2-18.8	INSERTION	254	ACGTATTCAGGAAACTCTGAAA	TCGACGAATGAATCTTGTTT	371	625
chrIV	11319803	11320354	cb25.fpc0081	Cb4	19.9	DELETION	63	AAACCAAGCTTTATCTCCCTAC	CTCCCGCTAAAACTAAGATTG	461	398
chrIV	11488335	11488613	cb25.fpc0081	Cb4	19.9	DELETION	69	CGACTGTAAAGGCTAAAACATT	GGTGAGTTTGAGAAGCCTAAT	1063	994
chrIV	11488555	11488987	cb25.fpc0081	Cb4	19.9	INSERTION	143	TAGTTTTGCAGAAATCCAAGTT	GGTGAGTTTGAGAAGCCTAAT	507	650
chrIV	12932957	12933992	cb25.fpc4132	Cb4	25.5	DELETION	463	AATTTACGACTTGTGAGATTCTG	GAAAAATTTCGAAAAACACATT	856	393
chrIV	13213501	13450489	cb25.fpc4217	Cb4	42.1	DELETION	908	CTTTCGGGATTTTGAGTTTT	TACGGTTTCTGGAACTGTCT	1417	509
chrIV	13610730	14375522	cb25.fpc3835	Cb4	50.1-53.7	DELETION	154	GACGAAACAGTTGTAAATCGTA	AATAGTCGAAATTGGCTAAAAA	677	523
chrIV	13782700	14204985	cb25.fpc3835	Cb4	50.1-53.7	DELETION	1707	TGTGAAATTTATTTAGAAATGTAGGA	GCATGGTTAGGGTTAATTCTC	2102	395
chrIV	14463460	14563949	cb25.fpc2328	Cb4	54.9-55.5	DELETION	182	GCTAGATTCACGTTTGTTTCTAA	TAGAGCCACCTAGACTTTAAGC	709	527
chrV	1714043	1714373	cb25.fpc2114	Cb5	2.5-3.2	INSERTION	206	AAGCCATTTTTGGTATTCTATTT	TTGCTGAAAAGGTTATGATAAAG	362	568
chrV	2150589	2150973	cb25.fpc4202	Cb5	3.2	INSERTION	157	CTGCTTCTCTGTCGTTCTCT	GGTCAGTGTGCTTGTTTATCA	382	539
chrV	2162500	2163128	cb25.fpc4202	Cb5	3.2	DELETION	100	CGTGACGTGTGTACATTGAT	TACCGTATCTGCTCTGAAAGA	677	577
chrV	2895353	2896764	cb25.fpc2310	Cb5	6.9	DELETION	1036	GGTATCTAGGATAGGATTTAAACAA	AAAATGTGATCCAATCTTTTTC	1400	364
chrV	3385367	3386558	cb25.fpc2310	Cb5	6.9	DELETION	775	TTATCAAAAATGCCTAAAGATTG	CATTATTTGTCCTATCCTCAAAG	1158	383
chrV	3541979	3542537	cb25.fpc0023	Cb5	8.3	DELETION	96	AGAAAATGTTCGATAAATTTGAA	AGCATAATTTCAGGGTTTTG	685	589
chrV	3910129	3911553	cb25.fpc0023	Cb5	8.3	DELETION	887	CATTTGAAGAATATGACGAGAAG	TATCAAATATTTCTCGGAACTCA	1291	404
chrV	4337225	4338008	cb25.fpc0023	Cb5	8.3	DELETION	176	TGTAATAACCTCTACCGGATCA	CCATTTTCTTTGAGATAGTAAGC	599	423
chrV	4662958	4663302	cb25.fpc0023	Cb5	8.3	DELETION	55	CAAGAAATTGCAGTGTTTCAT	TACATATACACATCGTTGGAAGA	402	347
chrV	5516887	5369562	cb25.fpc2051	Cb5	19.5	DELETION	64	GCGACTGTTCGTAACTTCTG	CGATAAGGTGGGAAATTTTAT	704	640
chrV	5526774	5360396	cb25.fpc2051	Cb5	19.5	DELETION	736	ATTCAGTTTGAAACCAGAAAAA	TGACAAAGAAGTTCAAAACTAGG	1175	439
chrV	5705648	5180789	cb25.fpc2051	Cb5	19.5	INSERTION	59	CCATTGTCTAAAACGGAAGA	CGTATGTTCGAATTCTCATTTT	389	448
chrV	6058181	7235712	cb25.fpc4470	Cb5	18.2-18.9	DELETION	102	TCATAAAGTCTGTGTGACAGGT	TCCCTAGCAACAAGTAAAACAC	560	458
chrV	6190703	7102751	cb25.fpc4470	Cb5	18.2-18.9	INSERTION	137	AGGCAAATTTTTATAAACTCTCA	TTTTACAATGTGCTTCAGGTT	621	758
chrV	8705519	8285926	cb25.fpc2220	Cb5	22.2-24.1	DELETION	51	TGCAGTCAATCGATGTGTAG	AAACGGTTGATCGTTGTATG	465	414
chrV	10900357	10901620	cb25.fpc4126	Cb5	24.1-25.4	DELETION	1011	AATCACTGTCCTTCTCACATTC	TAGATCGGATTGGAAGATGAT	1517	506
chrV	12060030	12061015	cb25.fpc0090	Cb5	26.7	DELETION	558	AGAGCGGTTGTAAACCTAAAT	TTTTAGCTTCTTCTACGTTAGGAT	1274	716
chrV	12110593	12111791	cb25.fpc0090	Cb5	26.7	DELETION	851	CGTTTCCGATAAAGAACAGT	TCGGATTTAGTTTCATCTCATT	1206	355
chrV	12288746	12289609	cb25.fpc0090	Cb5	26.7	DELETION	395	CATACCTCTCTTTGGAACGAT	TTTATTCAAAATTTTCTGAGACC	933	538
chrV	12490292	12490975	cb25.fpc0090	Cb5	26.7	DELETION	267	GGAACAATAAAACGATACAATACA	GGTAAGGGGGTAGTTTGAAGT	677	410
chrV	12963988	12964669	cb25.fpc0090	Cb5	26.7	DELETION	100	TCTCGTTTTGTCACGTTTTT	CCCAGCCTCTGAATATAAAAT	538	438
chrV	13222484	13223894	cb25.fpc0090	Cb5	26.7	DELETION	951	TACATGTGCTGCTTACTGTAGTT	AAATGTCATTCCAATTATAAGAGTT	1446	495
chrV	13461359	13630470	cb25.fpc4063	Cb5	40.2-40.8	DELETION	238	AGCACATTTTCAGTTCTAACATC	GCATTTTATGTGTGCTGTGA	692	454
chrV	13534056	13557752	cb25.fpc4063	Cb5	40.2-40.8	DELETION	282	TTGATTATGCAGTCACCTTAAAT	GGAGTGAGTTTTTGAGATTCTTC	673	391
chrV	14452436	14452521	cb25.fpc4109	Cb5	49.2	INSERTION	58	TCTTGGATGTTCATTTTTCTG	AATTGTTTTTCTCCCCAAAA	534	592
chrV	14467071	14467876	cb25.fpc4109	Cb5	49.2	DELETION	199	AGATAATGGGCGAAACAGTAG	ATCACTCAAGGTACTGTAGATTTTT	591	392
chrV	15282552	15283148	cb25.fpc0129	Cb5	56.9	INSERTION	50	GACACTCTTGATAATGGCTTTT	CTCCATGATAGAACTCTGTGAA	425	475
chrV	15590960	15591573	cb25.fpc0129	Cb5	56.9	DELETION	83	GCCAGTATTGATGTCATACCA	AAAATCCAAACGTCTTTCAA	499	416
chrV	15664958	15665453	cb25.fpc0129	Cb5	56.9	INSERTION	59	TGCTATTCTTAACCCTTACATCA	AATGACCCATACACCTGAAG	367	426
chrX	1169760	2617617	cb25.fpc4033	CbX	0.7-5.0	INSERTION	93	TTACCTTTGAAAAGGACAATTTA	TGTCAATGGAAATCGTTTTAG	365	458
chrX	1520663	2266864	cb25.fpc4033	CbX	0.7-5.0	DELETION	57	GCCAAAATCTTCATAATACTCTCT	TTTCTTAAAAGTTCAAAGCTTCA	420	363
chrX	1854478	1932832	cb25.fpc4033	CbX	0.7-5.0	INSERTION	163	GAACAGAGTGAGGATGATATGG	TATGTAGGCAAAACCTGAAAAC	390	553
chrX	2078690	1710195	cb25.fpc4033	CbX	0.7-5.0	DELETION	1533	GGATGAGTCAAAGGATTCATAA	TTGAACTTCATATGAGAATATTACCT	2193	660
chrX	3667502	3667736	cb25.fpc0045	CbX	8.4	INSERTION	75	GGTGAAGTCGATTATGAAAATTA	GCAATTTGTTAGGTACTGCTCTA	355	430
chrX	3676032	3676477	cb25.fpc0045	CbX	8.4	INSERTION	73	GATCAAAGCTGCTGTTATGG	CTTTCCTCTATTTACTGGGAATC	375	448
chrX	3847535	3849043	cb25.fpc0045	CbX	8.4	DELETION	930	AACACGTGATGGAGTATGTTTAT	CAGACACACATTACTAATCTCACA	1286	356
chrX	4692357	4693010	cb25.fpc0045	CbX	8.4	DELETION	88	TGTCTGCTCTTCCTTTGAAC	CGTTTCCTATTTTTATTCTCATTT	443	355
chrX	7198393	6854884	cb25.fpc4066	CbX	10.3	INSERTION	247	AATCTAGCCTGAAAACTGTAGG	GTCGAGTGTGTGATTCCTATTA	353	600
chrX	7202911	6850295	cb25.fpc4066	CbX	10.3	INSERTION	180	TAGAGCTGCTGTGACACTTG	CTCTTGTCGCACTCTAGTTTCTA	347	527
chrX	14673671	14675416	cb25.fpc0003	CbX	17.1-17.7	DELETION	1262	CAGTACCATAGTCTGCATCATT	AACTAAAATAAGTTTTGCGTTATTG	1625	363
chrX	14745040	14745618	cb25.fpc0003	CbX	17.1-17.7	INSERTION	51	GCTCTTTATTCACTCGACCA	AATTCAATGGATGTCATCGT	364	415
chrX	15062338	15064524	cb25.fpc0003	CbX	17.1-17.7	DELETION	1627	GAATTTTTCACCTCATTCTATCA	TGGAATTTGTTCTTATCAATTTT	1990	363
chrX	15218565	16094735	cb25.fpc4023	CbX	17.7-18.4	INSERTION	76	CATTGGATGAAAGTTCATATTTT	CGTTTGTTTCAAATGATTTTT	453	529
chrX	15583649	15729560	cb25.fpc4023	CbX	17.7-18.4	INSERTION	266	TGGTTGTATCTGAAGGAAGACT	GCCAAGATTTGAAAAATAAAATA	390	656
chrX	16051919	15262777	cb25.fpc4023	CbX	17.7-18.4	DELETION	1252	TGGTAATTCGATACTTGAGTTGT	TTTTCAGTATTGACCGTTATTTT	1628	376
chrX	16797625	16798163	cb25.fpc0106	CbX	21.0-21.7	DELETION	51	GATGTGCATCTGAATCTGTG	CTGTCGGCTTACAACTTCTG	1319	1268
chrX	20501281	20502039	cb25.fpc2334	CbX	27.7	DELETION	137	TGTGAGTGTATTGATTTTTATTAGC	GATGACAGGTGAAGTGAGAGA	486	349