{"id":162,"date":"2019-12-01T15:28:01","date_gmt":"2019-12-01T20:28:01","guid":{"rendered":"http:\/\/www.briggsae.org\/?page_id=162"},"modified":"2023-03-23T11:13:37","modified_gmt":"2023-03-23T15:13:37","slug":"resources","status":"publish","type":"page","link":"https:\/\/www.briggsae.org\/?page_id=162","title":{"rendered":"Resources, Tools, Databases, and Publications"},"content":{"rendered":"\n<ul class=\"wp-block-list\">\n<li>Mutant-based genetic linkage map (see <a href=\"https:\/\/www.briggsae.org\/?page_id=364\">Genetics &amp; Genomics<\/a>)<\/li>\n\n\n\n<li>SNP-based genetic linkage map (see <a href=\"https:\/\/www.briggsae.org\/?page_id=364\">Genetics &amp; Genomics<\/a>; also, the old <a rel=\"noreferrer noopener\" href=\"https:\/\/www.briggsae.org\/washu\" target=\"_blank\">WU St. Louis site &#8211; locally hosted<\/a>)<\/li>\n\n\n\n<li><em>C. elegans<\/em> natural diversity resource (Anderson lab) <a rel=\"noreferrer noopener\" href=\"https:\/\/elegansvariation.org\/\" target=\"_blank\">CeNDR<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/transgeneome.mpi-cbg.de\/transgeneomics\/index.html\">C. briggsae fosmid gDNA library<\/a><\/li>\n\n\n\n<li><a rel=\"noreferrer noopener\" href=\"http:\/\/nematode.net\" target=\"_blank\">nematodes.net<\/a> (Washington University, St Louis)<\/li>\n\n\n\n<li><a rel=\"noreferrer noopener\" href=\"https:\/\/www.hsls.pitt.edu\/obrc\/index.php?page=URL1097006093\" target=\"_blank\">NEMBASE<\/a> (for plant-parasitic nematodes)<\/li>\n\n\n\n<li><a rel=\"noreferrer noopener\" href=\"https:\/\/cbs.umn.edu\/cgc\/home\" target=\"_blank\">CGC (Caenorhabditis Genetics Center)<\/a><\/li>\n\n\n\n<li><a rel=\"noreferrer noopener\" href=\"https:\/\/parasite.wormbase.org\/Caenorhabditis_briggsae_prjna10731\/Info\/Index\/\" target=\"_blank\"><em>C. briggsae<\/em> Wormbase ParaSite<\/a><\/li>\n\n\n\n<li><a rel=\"noreferrer noopener\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA10731\" target=\"_blank\"><em>C. briggsae<\/em> NIH BioProject page<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/evolution.wormbase.org\/index.php\/Main_Page\">Wormbase <em>Caenorhabditis<\/em> evolution wiki<\/a><\/li>\n\n\n\n<li><a href=\"http:\/\/www.wormbase.org\/tools\/blast_blat\">Wormbase BLAST<\/a><\/li>\n\n\n\n<li><a href=\"http:\/\/www.ebi.ac.uk\/interpro\/\">Search Protein family<\/a> (InterPro)<\/li>\n\n\n\n<li><a rel=\"noreferrer noopener\" href=\"https:\/\/www.briggsae.org\/old\/\" target=\"_blank\">Old <em>briggsae.org<\/em> site<\/a> (mostly outdated)<\/li>\n\n\n\n<li><s><em>C. briggsae<\/em> Ensemble FTP trace server<\/s> (obsolete)<\/li>\n\n\n\n<li><a rel=\"noreferrer noopener\" href=\"https:\/\/www.briggsae.org\/old\/polymorph.php\" target=\"_blank\">Raw sequence reads<\/a> (HK104, VT847, HK105, and PB800)<\/li>\n\n\n\n<li><s><em>C. briggsae<\/em> research labs <\/s>(obsolete)<\/li>\n\n\n\n<li><a href=\"http:\/\/elegans.som.vcu.edu\/\"><s>Leon Avery WWW Server<\/s><\/a> (website shutdown)<\/li>\n<\/ul>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Mutant and transgenics strains (<a rel=\"noreferrer noopener\" href=\"http:\/\/guptalab.labdb.net\" data-type=\"URL\" data-id=\"http:\/\/guptalab.labdb.net\" target=\"_blank\">Gupta lab<\/a>, also see <a rel=\"noreferrer noopener\" href=\"https:\/\/journals.plos.org\/plosgenetics\/article?id=10.1371\/journal.pgen.1004993\" target=\"_blank\">Bi et al., PLoS Genetics 2015<\/a> for GFP integrated transgenic strains)<\/li>\n\n\n\n<li>Recombinant inbred lines using AF16 and HK104 strains (<a rel=\"noreferrer noopener\" href=\"https:\/\/journals.plos.org\/plosgenetics\/article?id=10.1371\/journal.pgen.1002174\" target=\"_blank\">Ross et al. PLoS Genetics 2011<\/a>)<\/li>\n\n\n\n<li>Recombinant inbred lines (99) using QX1410 and VX34 strains (genotyped 2,981 single nucleotide markers) &#8211; <a rel=\"noreferrer noopener\" href=\"https:\/\/academic.oup.com\/gbe\/article\/14\/4\/evac042\/6554914\" target=\"_blank\">Stevens et al. 2022<\/a><\/li>\n\n\n\n<li><a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1093\/g3journal\/jkac101\" target=\"_blank\">5&#8242; end analysis of transcripts by TEC-RED (Jhaveri et al. 2022)<\/a><\/li>\n\n\n\n<li>Wild isolates (at least 63) from various parts of the world (<a rel=\"noreferrer noopener\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16783011\" target=\"_blank\">Cutter et al., Genetics 2006<\/a>)<\/li>\n\n\n\n<li>MosI transposon-based mutant screen (M.-A. Felix) (<a rel=\"noreferrer noopener\" href=\"https:\/\/www.briggsae.org\/washu\/mos-mutagenesis.html\" target=\"_blank\">More info<\/a>)<\/li>\n\n\n\n<li><s>Genomic clones &#8211; RPCI-94 BAC clones (CHORI) (Additional info)<\/s><\/li>\n<\/ul>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a rel=\"noreferrer noopener\" href=\"http:\/\/www.wormbook.org\/chapters\/www_Cbriggsaemethods\/Cbriggsaemethods.html\" target=\"_blank\"><em>C. briggsae<\/em> Wormbook methods chapter (Baird and Chamberlin, 2006)<\/a><\/li>\n\n\n\n<li><a rel=\"noreferrer noopener\" href=\"http:\/\/www.wormbook.org\/chapters\/www_genomesCbriggsae\/genomesCbriggsae.html\" target=\"_blank\"><em>C. briggsae<\/em> Wormbook review (Gupta et al. 2007)<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/www.briggsae.org\/old\/NemaIsolGuide\/index.html\">Nematode isolation guide<\/a><\/li>\n\n\n\n<li><em>C. briggsae<\/em> publications (NCBI PubMed): <a rel=\"noreferrer noopener\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/sites\/entrez?cmd=search&amp;db=pubmed&amp;term=nematode[title\/abstract]+OR+caenorhabditis[title\/abstract]+OR+evolution[title\/abstract]+AND+briggsae[title\/abstract]+AND+2023[publication%20date]\" target=\"_blank\">2023<\/a> &#8211; <a rel=\"noreferrer noopener\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/sites\/entrez?cmd=search&amp;db=pubmed&amp;term=nematode[title\/abstract]+OR+caenorhabditis[title\/abstract]+OR+evolution[title\/abstract]+AND+briggsae[title\/abstract]+AND+2022[publication%20date]\" target=\"_blank\">2022<\/a> &#8211; <a rel=\"noreferrer noopener\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/sites\/entrez?cmd=search&amp;db=pubmed&amp;term=nematode[title\/abstract]+OR+caenorhabditis[title\/abstract]+OR+evolution[title\/abstract]+AND+briggsae[title\/abstract]+AND+2021[publication%20date]\" target=\"_blank\">2021<\/a> &#8211; <a rel=\"noreferrer noopener\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/sites\/entrez?cmd=search&amp;db=pubmed&amp;term=nematode[title\/abstract]+OR+caenorhabditis[title\/abstract]+OR+evolution[title\/abstract]+AND+briggsae[title\/abstract]+AND+2020[publication%20date]\" target=\"_blank\">2020<\/a> &#8211; <a rel=\"noreferrer noopener\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/sites\/entrez?cmd=search&amp;db=pubmed&amp;term=nematode[title\/abstract]+OR+caenorhabditis[title\/abstract]+OR+evolution[title\/abstract]+AND+briggsae[title\/abstract]+AND+2019[publication date]\" target=\"_blank\">2019<\/a> &#8211; <a rel=\"noreferrer noopener\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed?cmd=search&amp;term=nematode[title%2Fabstract]+OR+caenorhabditis[title%2Fabstract]+OR+evolution[title%2Fabstract]+AND+briggsae[title%2Fabstract]+AND+2018[publication+date]\" target=\"_blank\">2018<\/a> &#8211; <a rel=\"noreferrer noopener\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/sites\/entrez?cmd=search&amp;db=pubmed&amp;term=nematode[title\/abstract]+OR+caenorhabditis[title\/abstract]+OR+evolution[title\/abstract]+AND+briggsae[title\/abstract]\" target=\"_blank\">ALL<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/www.briggsae.org\/?page_id=512\"><s>Worm meeting abstracts<\/s><\/a> (obsolete)<\/li>\n<\/ul>\n\n\n\n<p><em>Please let us know if there are any other resources that should be listed above. <\/em><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Please let us know if there are any other resources that should be listed above.<\/p>\n","protected":false},"author":4,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_coblocks_attr":"","_coblocks_dimensions":"","_coblocks_responsive_height":"","_coblocks_accordion_ie_support":"","footnotes":""},"class_list":["post-162","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/pages\/162","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/users\/4"}],"replies":[{"embeddable":true,"href":"https:\/\/www.briggsae.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=162"}],"version-history":[{"count":24,"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/pages\/162\/revisions"}],"predecessor-version":[{"id":810,"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/pages\/162\/revisions\/810"}],"wp:attachment":[{"href":"https:\/\/www.briggsae.org\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=162"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}