{"id":790,"date":"2023-03-21T20:51:45","date_gmt":"2023-03-22T00:51:45","guid":{"rendered":"http:\/\/www.briggsae.org\/?page_id=790"},"modified":"2023-03-21T20:57:03","modified_gmt":"2023-03-22T00:57:03","slug":"snps-koboldt-et-al-bmc-genomics-2010","status":"publish","type":"page","link":"https:\/\/www.briggsae.org\/?page_id=790","title":{"rendered":"SNPs (Koboldt et al. BMC Genomics 2010)"},"content":{"rendered":"\n

Table 2 from the paper (DOI: 10.1186\/1471-2164-11-236<\/a>)<\/p>\n\n\n\n\n\n\n\t\n\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t
Chr<\/th>SNP id<\/th>Location (cM)<\/th>Ultra_contig<\/th>RE<\/th>Expected DNA fragments in AF16 (bp) <\/th>Observed DNA fragments in AF16 (bp)<\/th>Expected DNA fragments in HK104 (bp) <\/th>Observed DNA fragments in HK104 (bp)<\/th>Validation type (* as predicted; ** different from prediction)<\/th>\n<\/tr>\n<\/thead>\n
1<\/td>cb15251<\/td>13.45<\/td>cb25.fpc4321<\/td>DraI<\/td>747<\/td>700<\/td>332 and 415<\/td>310 and 400<\/td>*<\/td>\n<\/tr>\n
<\/td>cb55627<\/td>21.82<\/td>cb25.fpc3441<\/td>HindIII<\/td>691<\/td>691<\/td>251 and 440<\/td>270 and 440<\/td>*<\/td>\n<\/tr>\n
<\/td>cb55670<\/td>21.82<\/td>cb25.fpc3441<\/td>DraI<\/td>312 and 437<\/td>749<\/td>749<\/td>312 and 437<\/td>**<\/td>\n<\/tr>\n
<\/td>cb650 (bhP27)<\/td>43.93<\/td>cb25.fpc4140<\/td>SacI<\/td>689<\/td>689<\/td>257 and 432<\/td>257 and 432<\/td>*<\/td>\n<\/tr>\n
2<\/td>cb41028<\/td>11.88-13.1<\/td>cb25.fpc0011<\/td>DraI<\/td>332 and 419<\/td>332 and 400<\/td>751<\/td>800<\/td>*<\/td>\n<\/tr>\n
<\/td>cb43091<\/td>21.28-26.58<\/td>cb25.fpc0058<\/td>HindIII<\/td>748<\/td>800<\/td>365 and 383<\/td>383 and 383<\/td>*<\/td>\n<\/tr>\n
<\/td>cb64777<\/td>27.92-33.95<\/td>cb25.fpc4206<\/td>DraI<\/td>325 and 424<\/td>325 and 400<\/td>749<\/td>749<\/td>*<\/td>\n<\/tr>\n
3<\/td>cb20723<\/td>12.46<\/td>cb25.fpc4153<\/td>DraI<\/td>20, 196, 220 and 311<\/td>230, 311 and 390<\/td>20, 196 and 531<\/td>230 and 800<\/td>**<\/td>\n<\/tr>\n
<\/td>cb54953<\/td>21.77<\/td>cb25.fpc2976<\/td>HindIII<\/td>751<\/td>800<\/td>368 and 383<\/td>380 and 400<\/td>*<\/td>\n<\/tr>\n
<\/td>cb40003<\/td>31.14<\/td>cb25.fpc0002<\/td>DraI<\/td>685<\/td>PCR failure<\/td>208 and 477<\/td>800<\/td><\/td>\n<\/tr>\n
4<\/td>cb8971<\/td>7.88<\/td>cb25.fpc4250<\/td>DraI<\/td>750<\/td>PCR failure<\/td>337 and 413<\/td>350 and 413<\/td><\/td>\n<\/tr>\n
<\/td>cb48850<\/td>20.02<\/td>cb25.fpc1570<\/td>HindIII<\/td>750<\/td>780<\/td>314 and 436<\/td>350 and 500<\/td>*<\/td>\n<\/tr>\n
<\/td>cb56202<\/td>37.52-41.16<\/td>cb25.fpc3835<\/td>DraI<\/td>60, 190 and 489<\/td>60, 190 and 500<\/td>60 and 679<\/td>60 and 800<\/td>*<\/td>\n<\/tr>\n
5<\/td>cb39304<\/td>20.98-22.23<\/td>cb25.fpc4126<\/td>HindIII<\/td>742<\/td>790<\/td>286 and 456<\/td>310 and 470<\/td>*<\/td>\n<\/tr>\n
<\/td>cb39354<\/td>20.98-22.23<\/td>cb25.fpc4126<\/td>DraI<\/td>751<\/td>PCR failure<\/td>269 and 482<\/td>PCR failure<\/td><\/td>\n<\/tr>\n
<\/td>cb62<\/td>17.07-17.74<\/td>cb25.fpc4470<\/td>DraI<\/td>54, 295 and 400<\/td>PCR failure<\/td>54 and 695<\/td>800<\/td><\/td>\n<\/tr>\n
<\/td>bdP3<\/td>unknown<\/td>cb25.fpc0156<\/td>DraI<\/td>907<\/td>907<\/td>227 and 680 <\/td>227 and 680<\/td>*<\/td>\n<\/tr>\n
X<\/td>cb20148<\/td>9.52<\/td>cb25.fpc0045<\/td>DraI<\/td>660<\/td>PCR failure<\/td>171 and 489<\/td>PCR failure<\/td><\/td>\n<\/tr>\n
<\/td>cb40232<\/td>20.1-20.71<\/td>cb25.fpc0003<\/td>HindIII<\/td>237 and 473<\/td>300 and 473<\/td>710<\/td>850<\/td>*<\/td>\n<\/tr>\n
<\/td>cb6050<\/td>24.07<\/td>cb25.fpc4403<\/td>DraI<\/td>750<\/td>PCR failure<\/td>270 and 480<\/td>290 and 510<\/td><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"

Table 2 from the paper (DOI: 10.1186\/1471-2164-11-236)<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_coblocks_attr":"","_coblocks_dimensions":"","_coblocks_responsive_height":"","_coblocks_accordion_ie_support":"","footnotes":""},"class_list":["post-790","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/pages\/790","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.briggsae.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=790"}],"version-history":[{"count":2,"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/pages\/790\/revisions"}],"predecessor-version":[{"id":792,"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/pages\/790\/revisions\/792"}],"wp:attachment":[{"href":"https:\/\/www.briggsae.org\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=790"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}