{"id":712,"date":"2018-03-18T23:11:00","date_gmt":"2018-03-19T03:11:00","guid":{"rendered":"http:\/\/www.briggsae.org\/?p=712"},"modified":"2023-03-18T23:12:40","modified_gmt":"2023-03-19T03:12:40","slug":"ren-et-al-2018-report-c-nigoni-genome-sequence-assembly-and-improved-c-briggsae-assembly","status":"publish","type":"post","link":"https:\/\/www.briggsae.org\/?p=712","title":{"rendered":"Ren et al. (2018) report C. nigoni genome sequence assembly and improved C. briggsae assembly"},"content":{"rendered":"\n<p>Ren et al. (2018). Genomic basis of recombination suppression in the hybrid between <em>Caenorhabditis briggsae<\/em> and <em>C. nigoni<\/em>. Nucleic Acid Research. <\/p>\n\n\n\n<p><a href=\"https:\/\/academic.oup.com\/nar\/article\/46\/3\/1295\/4793371\">https:\/\/academic.oup.com\/nar\/article\/46\/3\/1295\/4793371<\/a><\/p>\n\n\n\n<p>The cb4 <em>C. briggsae<\/em> assembly contains 5,997 gaps (represented by \u2018Ns\u2019) and 361 contigs not anchored to any chromosome (&#8216;unassigned&#8217;). Ren et al. filled 2,304 gaps by replacing ~240 kbs on six chromosomes and partially closed gaps in \u2018unassigned contigs\u2019 and extended ~800 kb sequences. This resulted in a total of ~1,040 kb of new sequence data. The authors also anchored 124 of 361 \u2018unassigned\u2019 contigs that added ~1.8 Mb back to individual chromosomes. <\/p>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Ren et al. (2018). Genomic basis of recombination suppression in the hybrid between Caenorhabditis briggsae and C. nigoni. Nucleic Acid Research. https:\/\/academic.oup.com\/nar\/article\/46\/3\/1295\/4793371 The cb4 C. briggsae assembly contains 5,997 gaps (represented by \u2018Ns\u2019) and 361 contigs not anchored to any chromosome (&#8216;unassigned&#8217;). Ren et al. filled 2,304 gaps by replacing ~240 kbs on six chromosomes &hellip; <a href=\"https:\/\/www.briggsae.org\/?p=712\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":4,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_coblocks_attr":"","_coblocks_dimensions":"","_coblocks_responsive_height":"","_coblocks_accordion_ie_support":"","footnotes":""},"categories":[20],"tags":[21],"class_list":["post-712","post","type-post","status-publish","format-standard","hentry","category-news","tag-news"],"_links":{"self":[{"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/posts\/712","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/users\/4"}],"replies":[{"embeddable":true,"href":"https:\/\/www.briggsae.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=712"}],"version-history":[{"count":1,"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/posts\/712\/revisions"}],"predecessor-version":[{"id":713,"href":"https:\/\/www.briggsae.org\/index.php?rest_route=\/wp\/v2\/posts\/712\/revisions\/713"}],"wp:attachment":[{"href":"https:\/\/www.briggsae.org\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=712"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.briggsae.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=712"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.briggsae.org\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=712"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}