Table 4 (Small indels) from the paper (DOI: 10.1186/1471-2164-11-236)
| Chr | Indel ID | Location (cM) | Ultra_contig | Predicted indel size (bp) | AF16 predicted amplicon (bp) | HK104 predicted amplicon (bp) | Status |
|---|---|---|---|---|---|---|---|
| 1 | bhP41 | unknown | cb25.fpc4180 | 16 | 242 | 258 | Inconsistent products |
| bhP42 | unknown | cb25.fpc4184 | 15 | 252 | 267 | True | |
| bhP19 | 0.7 | cb25.fpc2695 | 32 | 247 | 215 | True | |
| bhP43 | 14 | cb25.fpc3857b | 12 | 245 | 257 | Multiple products | |
| bhP7 | 28.6 | cb25.fpc2032 | 7 | 246 | 239 | True | |
| bhP1 | 29.2 | cb25.fpc3441 | 10 | 250 | 260 | True | |
| bhP29 | ~52 | cb25.fpc4140 | 17 | 248 | 231 | True | |
| 2 | bhP20 | 2.4 | cb25.fpc4168 | 21 | 248 | 227 | Inconsistent products |
| bhP6 | ~8 | cb25.fpc0071 | 11 | 973 | 962 | True | |
| bhP2 | ~10 | cb25.fpc3052a | 7 | 243 | 236 | True | |
| bhP33 | ~10 | cb25.fpc3052a | 44 | 245 | 201 | Inconsistent products | |
| bhP28 | 11.9-13.1 | cb25.fpc0011 | 22 | 249 | 227 | Inconsistent products | |
| bhP32 | 11.9-13.1 | cb25.fpc0011 | 21 | 250 | 271 | True | |
| bhP21 | 23.3-28.6 | cb25.fpc0058 | 20 | 251 | 231 | True | |
| bhP44 | ~38 | cb25.fpc1402a | 12 | 312 | 324 | Failed PCR in HK104 | |
| bhP8 | 49.9 | cb25.fpc0305 | 18 | 249 | 231 | True | |
| 3 | bhP18 | 0 | cb25.fpc4010 | 8 | 248 | 256 | True |
| bhP14 | 12.5 | cb25.fpc4153 | 22 | 241 | 219 | True | |
| bhP38 | 16.8-17.5 | cb25.fpc2187 | 44 | 249 | 293 | True | |
| bhP12 | 21.2 | cb25.fpc2976 | 29 | 248 | 219 | True | |
| bhP34 | 21.8 | cb25.fpc2976 | 7 | 246 | 239 | True | |
| bhP39 | 25.7 | cb25.fpc0201 | 13 | 250 | 263 | Multiple products | |
| bhP40 | 30 | cb25.fpc0002 | 20 | 250 | 270 | True | |
| bhP10 | 35.4 | cb25.fpc4224 | 11 | 249 | 238 | No indel | |
| 4 | bhP13 | 1.9-5.1 | cb25.fpc3752 | 14 | 250 | 264 | True |
| bhP15 | 7.9 | cb25.fpc4250 | 20 | 250 | 270 | True | |
| bhP45 | 17.6 | cb25.fpc4260 | 20 | 245 | 265 | True | |
| bhP4 | 18.2-18.8 | cb25.fpc0039 | 9 | 250 | 241 | Inconsistent products | |
| bhP11 | 20.6 | cb25.fpc4090 | 18 | 251 | 233 | True | |
| bhP9 | 31 | cb25.fpc1570 | 16 | 256 | 272 | True | |
| bhP16 | 43.5 | cb25.fpc0107 | 21 | 251 | 230 | True | |
| bhP30 | 57.8 | cb25.fpc3052b | 20 | 248 | 262 | Inconsistent products | |
| bhP46 | 57.8 | cb25.fpc3052b | 10 | 242 | 252 | Multiple products | |
| 5 | bhP22 | 1.9 | cb25.fpc4095 | 14 | 249 | 263 | Inconsistent products |
| bhP31 | 2.5-3.2 | cb25.fpc2114 | 24 | 244 | 268 | True | |
| bhP47 | 9.6 | cb25.fpc2887a | 21 | 243 | 222 | True | |
| bhP37 | 18.9 | cb25.fpc4470 | 10 | 251 | 261 | True | |
| bhP5 | 26.7 | cb25.fpc0090 | 16 | 291 | 275 | True | |
| bhP23 | 26.7 | cb25.fpc0090 | 22 | 250 | 228 | Multiple products | |
| bhP48 | 40.2-40.8 | cb25.fpc4063 | 22 | 249 | 271 | True | |
| bhP24 | 56.9 | cb25.fpc0129 | 16 | 242 | 258 | True | |
| X | bhP25 | 8.4 | cb25.fpc0045 | 32 | 250 | 218 | True |
| bhP36 | 13.6-16.3 | cb25.fpc4044b | 11 | 244 | 255 | True | |
| bhP26 | 21-21.7 | cb25.fpc0106 | 22 | 251 | 229 | True | |
| bhP49 | 34.1 | cb25.fpc0829 | 14 | 250 | 264 | True | |
| The table is organized similar to Table 3. The “Status” column shows whether an indel was correctly verified by PCR cases DNA sizes were determined by visual inspection. | |||||||